| GRE12 | PAOK THESSALONIKI | |||||||||||
| season | cup | round | opponents | result | scorers | result | scorers | |||||
| 65-66 | E3 | 16 | Wiener Sport-Club | H | 2-1 | Kudas, Muratidis | A | 0-6 | ||||
| 67-68 | E3 | 32 | RFC Liegeois | A | 2-3 | Afendulidis, Makris | H | 0-2 | ||||
| 70-71 | E3 | 32 | Dinamo București | A | 0-5 | H | 1-0 | Kudas | ||||
| 72-73 | E2 | 16 | SK Rapid Wien | A | 0-0 | H | 2-2 | + | Aslanidis, Sarafis | |||
| 73-74 | E2 | 16 | WKS Legia Warszawa | A | 1-1 | Terzanidis | H | 1-0 | Paridis | |||
| 08 | Olympique Lyonnais | A | 3-3 | Aslanidis, Terzanidis, Sarafis | H | 4-0 | Paridis (2), Aslanidis, Terzanidis | |||||
| 04 | Milan AC | A | 0-3 | H | 2-2 | Sarafis (2) | ||||||
| 74-75 | E2 | 16 | FK Crvena zvezda Beograd | H | 1-0 | Terzanidis | A | 0-2 | * | |||
| 75-76 | E3 | 32 | FC Barcelona | H | 1-0 | Kudas | A | 1-6 | Anastasiadis | |||
| 76-77 | E1 | 16 | AS Omonoia Lefkosia | A | 2-0 | Kudas, Sarafis | H | 1-1 | Sarafis | |||
| 08 | Dinamo Kiev | A | 0-4 | H | 0-2 | |||||||
| 77-78 | E2 | 16 | KS Zagłębie Sosnowiec | H | 2-0 | Pelios, Anastasiadis | A | 2-0 | Kermanidis, Damanakis | |||
| 08 | BK Vejle | A | 0-3 | H | 2-1 | Orfanos, Kermanidis | ||||||
| 78-79 | E2 | 16 | Servette FC Genčve | H | 2-0 | Kermanidis, Sarafis | A | 0-4 | ||||
| 81-82 | E2 | 16 | SG Eintracht Frankfurt | A | 0-2 | H | 2-0 | & | Kostikos (2) | |||
| 82-83 | E3 | 32 | FC Sochaux Montbčliard | H | 1-0 | H.Dimopoulos | A | 1-2 | *^ | H.Dimopoulos | ||
| 16 | Sevilla FC | H | 2-0 | H.Dimopoulos, Kostikos | A | 0-4 | ||||||
| 83-84 | E3 | 32 | DFS Lokomotiv Plovdiv | A | 2-1 | H.Dimopoulos, Yeorgopoulos | H | 3-1 | Kostikos, Skartados, H.Dimopoulos | |||
| 16 | FC Bayern München | H | 0-0 | A | 0-0 | & | ||||||
| 85-86 | E1 | 16 | AC Hellas-Verona | A | 1-3 | Skartados | H | 1-2 | Vasiliakos | |||
| 88-89 | E3 | 32 | SSC Napoli | A | 0-1 | H | 1-1 | Skartados | ||||
| 90-91 | E3 | 32 | Sevilla FC | A | 0-0 | H | 0-0 | & | ||||
| 91-92 | E3 | 32 | KV Mechelen | H | 1-1 | Skartados | A | 1-0 | Borbokis | |||
| 16 | FCS Tirol Innsbruck | H | 0-2 | A | 0-2 | |||||||
| 92-93 | E3 | 32 | Paris Saint-Germain FC | A | 0-2 | H | (0-3) | (UEFA Jury - on ground 0-2 suspended) | ||||
| 97-98 | E3 | P2 | FC Spartak Trnava | H | 5-3 | Zagorakis, Marangos (2), Frantzeskos, Olivares | A | 1-0 | Zagorakis | |||
| 32 | Arsenal FC London | H | 1-0 | Frantzeskos | A | 1-1 | Vrizas | |||||
| 16 | Club Atlético Madrid | A | 2-5 | Frantzeskos, Marangos | H | 4-4 | Frantzeskos, Olivares, Zagorakis, Zubulis | |||||
| 98-99 | E3 | P2 | Rangers FC Glasgow | A | 0-2 | H | 0-0 | |||||
| 99-00 | E3 | R1 | SK Lokomotivi Tbilisi | A | 7-0 | Y.H.Yeorgiadis (2), Abd El Sattar Sabry, Frussos (2), Marangos, Frantzeskos | H | 2-0 | Valencia, Salpingidis | |||
| R2 | Sport Lisboa e Benfica | H | 1-2 | Frantzeskos | A | 2-1 | & | Marangos, Abd El Sattar Sabry | ||||
| 00-01 | E3 | R1 | MK Beitar Yerushaláyim | H | 3-1 | Camps, Cohen (o.g.), Nalitzis | A | 3-3 | Katsampis, Nalitzis, P.Konstantinidis | |||
| R2 | Udinese Calcio | A | 0-1 | H | 3-0 | * | Camps (2), Frussos | |||||
| 16 | PSV Eindhoven | A | 0-3 | H | 0-1 | |||||||
| 01-02 | E3 | R1 | FC Kärnten Klagenfurt | A | 0-0 | H | 4-0 | P.Konstantinidis (2), Kafes, Luciano | ||||
| R2 | FC Marila Příbram | H | 6-1 | Yiasoumi (2), Okkas (2), P.Konstantinidis, Luciano | A | 2-2 | Luciano, Yiasoumi | |||||
| 16 | PSV Eindhoven | H | 3-2 | Yiasoumi (2), Udeze | A | 1-4 | Okkas | |||||
| 02-03 | E3 | R1 | Leixoes SC Matosinhos | A | 1-2 | Kukielka | H | 4-1 | Salpingidis, Okkas (2), Kutsopulos | |||
| R2 | Grasshopper-Club Zürich | H | 2-1 | Hasiotis, Yiasoumi | A | 1-1 | Markos | |||||
| 16 | SK Slavia Praha | H | 1-0 | Y.H.Yeorgiadis | A | 0-4 | ||||||
| 03-04 | E3 | R1 | SFK Lyn Oslo | H | 0-1 | A | 3-0 | Yiasoumi, Koutsis, Vokolos | ||||
| R2 | Debreceni VSC-MegaForce | H | 1-1 | Karadimos | A | 0-0 | + | |||||
| 04-05 | E1 | P3 | MK Maccabi Tel Aviv | A | (0-3) | (UEFA Jury - on ground 1-2) | H | 0-1 | ||||
| E3 | R1 | AZ Alkmaar | H | 2-3 | Salpingidis, Vokolos | A | 1-2 | Salpingidis | ||||
| 05-06 | E3 | R1 | FK Metalurh Donetsk | H | 1-1 | Salpingidis | A | 2-2 | ^ | Salpingidis, P.Konstantinidis | ||
| R2 | FK Shakhtar Donetsk | A | 0-1 | |||||||||
| R2 | VfB Stuttgart | H | 1-2 | Karipidis | ||||||||
| R2 | AFC Rapid Bucureşti | A | 0-1 | |||||||||
| R2 | Stade Rennais FC | H | 5-1 | Rochat (o.g.), Hristodoulopoulos, Yiasoumi (2), Salpingidis | ||||||||
| 09-10 | E3 | P3 | Vĺlerenga Fotball Oslo | A | 2-1 | Lino, Muslimović | H | 0-1 | ^ | |||
| P4 | SC Heerenveen | H | 1-1 | Ivić | A | 0-0 | + | |||||
| 10-11 | E1 | P3 | AFC Ajax Amsterdam | A | 1-1 | Ivić | H | 3-3 | + | Vieirinha, Salpingidis, Ivić | ||
| E3 | P4 | Fenerbahçe SK İstanbul | H | 1-0 | Vieirinha | A | 1-1 | * | Muslimović | |||
| G1 | Club Brugge KV | A | 1-1 | Malezas | H | 1-1 | Vieirinha | |||||
| G1 | NK Dinamo Zagreb | H | 1-0 | Ivić | A | 1-0 | Salpingidis | |||||
| G1 | Villarreal CF | A | 0-1 | H | 1-0 | Vieirinha | ||||||
| 16 | PFK CSKA Moskva | H | 0-1 | A | 1-1 | Muslimović | ||||||
| 11-12 | E3 | P3 | Vĺlerenga Fotball Oslo | A | 2-0 | Vieirinha, Pablo García | H | 3-0 | Vieirinha, Athanasiadis, Fotakis | |||
| P4 | FK Karpaty Lviv | H | 2-0 | Athanasiadis, Lino | A | 1-1 | Balafas | |||||
| G1 | Tottenam Hotspur FC London | H | 0-0 | A | 2-1 | Salpingidis, Athanasiadis | ||||||
| G1 | FK Rubin Kazan | A | 2-2 | Athanasiadis, Fotakis | H | 1-1 | Vieirinha | |||||
| G1 | Shamrock Rovers FC Dublin | H | 2-1 | Lazăr, Vieirinha | A | 3-1 | Salpingidis (2), Fotakis | |||||
| 16 | Udinese Calcio | A | 0-0 | H | 0-3 | |||||||
| 12-13 | E3 | P3 | MK Bnei Yehuda Tel Aviv | A | 2-0 | Y.Yeorgiadis, Athanasiadis | H | 4-1 | Athanasiadis (2), Robert, Pelkas | |||
| P4 | SK Rapid Wien | H | 2-1 | Athanasiadis, Katsikas | A | 0-3 | ||||||
| 13-14 | E1 | P3 | FK Metalist Kharkiv | H | 0-2 | A | 1-1 | Necid | ||||
| FK Metalist Kharkiv disqualified by UEFA Jury and replaced by PAOK Thessaloniki | ||||||||||||
| P4 | FC Gelsenkirchen Schalke 04 | A | 1-1 | Stoch | H | 2-3 | Athanasiadis, Katsouranis | |||||
| E3 | G1 | FK Shakhtyor Qaraghandy | H | 2-1 | Athanasiadis, Vukić | A | 2-0 | Džidić (o.g.), Kitsiou | ||||
| G1 | AZ Alkmaar | A | 1-1 | Salpingidis | H | 2-2 | Lucas, Pozoglou | |||||
| G1 | MK Maccabi Haifa | H | 3-2 | Miguel Vitor, Ninis, Salpingidis | A | 0-0 | ||||||
| 16 | Sport Lisboa e Benfica | H | 0-1 | A | 0-3 | |||||||
| 14-15 | E3 | P4 | FC Zimbru Chişinău | A | 0-1 | H | 4-0 | Pereyra, Athanasiadis, Mak, Martens | ||||
| G1 | FK Dynama Minsk | H | 6-1 | Nikolić (o.g.), Athanasiadis (3), D.Papadopoulos, Tzandaris | A | 2-0 | Athanasiadis (2) | |||||
| G1 | En Avant de Guingamp | A | 0-2 | H | 1-2 | Athanasiadis | ||||||
| G1 | ACF Fiorentina | H | 0-1 | A | 1-1 | Martens | ||||||
| 15-16 | E3 | P2 | NK Lokomotiva Zagreb | A | 1-2 | Mak | H | 6-0 | Lucas, Mak (2), Pelkas, Kitsiou, Mrčela (o.g.) | |||
| P3 | FC Spartak Trnava | H | 1-0 | Lucas | A | 1-1 | D.Konstantinidis | |||||
| P4 | Brřndby IF | H | 5-0 | Mak (3), Pelkas, Garry Rodrigues | A | 1-1 | Ricardo Costa | |||||
| G1 | Qəbələ PFK | A | 0-0 | H | 0-0 | |||||||
| G1 | BV 09 Borussia Dortmund | H | 1-1 | Mak | A | 1-0 | Mak | |||||
| G1 | FK Krasnodar | H | 0-0 | A | 1-2 | Mak | ||||||
| 16-17 | E1 | P3 | AFC Ajax Amsterdam | A | 1-1 | Djalma | H | 1-2 | Athanasiadis | |||
| E3 | P4 | SK Dinamo Tbilisi | A | 3-0 | Léo Matos, Crespo, Pereyra | H | 2-0 | Garry Rodrigues, Tzavellas | ||||
| G1 | ACF Fiorentina | H | 0-0 | A | 3-2 | Shakhov, Djalma, Garry Rodrigues | ||||||
| G1 | FC Slovan Liberec | A | 2-1 | Athanasiadis (2) | H | 2-0 | Garry Rodrigues, Pelkas | |||||
| G1 | Qarabağ FK Ağdam Bakı | A | 0-2 | H | 0-1 | |||||||
| 16 | FC Gelsenkirchen-Schalke 04 | H | 0-3 | A | 1-1 | Nastasić (o.g.) | ||||||
| 17-18 | E3 | P3 | FK Olimpik Donetsk | A | 1-1 | Pedro Henrique | H | 2-0 | Mak, Cimirot | |||
| P4 | Östersunds FK | H | 3-1 | Léo Matos, Prijović (2) | A | 0-2 | + | |||||
| 18-19 | E1 | Q2 | FC Basel 1893 | H | 2-1 | Cańas, Prijović | A | 3-0 | Fernando Varela, Prijović, El Kaddouri | |||
| Q3 | FK Spartak Moskva | H | 3-2 | Prijović, Limnios, Pelkas | A | 0-0 | ||||||
| Q4 | Sport Lisboa e Benfica | A | 1-1 | Warda | H | 1-4 | Prijović | |||||
| E3 | G1 | Chelsea FC London | H | 0-1 | A | 0-4 | ||||||
| G1 | FK BATE Barysaw | A | 4-1 | Prijović, Léo Jabá (2), Pelkas | H | 1-3 | Prijović | |||||
| G1 | MOL Vidi (Videoton) FC Székesfehérvár | H | 0-2 | A | 0-1 | |||||||
| 19-20 | E1 | Q3 | AFC Ajax Amsterdam | H | 2-2 | Akpom, Leo Matos | A | 2-3 | Biseswar (2) | |||
| E3 | Q4 | ŠK Slovan Bratislava | A | 0-1 | H | 3-2 | + | Limnios, Świderski, Yannoulis | ||||
| 20-21 | E1 | Q2 | Beşiktaş JK İstanbul | H | 3-1 | Tzolis (2), Pelkas | ||||||
| Q3 | Sport Lisboae Benfica | H | 2-1 | Yannoulis, Živković | ||||||||
| Q4 | FK Krasnodar | A | 1-2 | Pelkas | H | 1-2 | El Kaddouri | |||||
| E3 | GS | AS Omonoia Lefkosia | H | 1-1 | Murg | A | 1-2 | Tzolis | ||||
| GS | Granada CF | A | 0-0 | H | 0-0 | |||||||
| GS | PSV Eindhoven | H | 4-1 | Schwab, Živković (2), Tzolis | A | 2-3 | Fernando Varela, Tzolis | |||||
| 21-22 | E4 | Q3 | Bohemians FC Dublin | A | 1-2 | Nélson Oliveira | H | 2-0 | Schwab, Biseswar | |||
| Q4 | HNK Rijeka | H | 1-1 | Galešić (o.g.) | A | 2-0 | El Kaddouri, Murg | |||||
| GS | Lincoln Red Imps FC Gibraltar | A | 2-0 | Akpom, Mitriţă | H | 2-0 | Živković, Schwab | |||||
| GS | ŠK Slovan Bratislava | H | 1-1 | Akpom | A | 0-0 | ||||||
| GS | FC Křbenhavn | A | 2-1 | Sidcley, Živković | H | 1-2 | Živković | |||||
| 16 | FC Midtjylland Herning | A | 0-1 | H | 2-1 | % | Živković, Vieirinha | |||||
| 08 | KAA Gent | H | 1-0 | Kurtić | A | 2-1 | Crespo, Douglas Augusto | |||||
| 04 | Olympique de Marseille | A | 1-2 | El Kaddouri | H | 0-1 | ||||||
| 22-23 | E4 | Q2 | PFK Levski Sofia | A | 0-2 | H | 1-1 | Dantas | ||||
| 23-24 | E4 | Q2 | MK Beitar Yerushaláyim | H | 0-0 | A | 4-1 | Gotlieb (o.g.), B.Thomas, T.Thomas (o.g.), Konstantelias | ||||
| Q3 | HNK Hajduk Split | A | 0-0 | H | 3-0 | Schwab, Živković (2) | ||||||
| Q4 | Heart od Midlothian FC Edinburgh | A | 2-1 | Schwab, Živković | H | 4-0 | Taison (2), Konstantelias, B.Thomas | |||||
| GS | HJK Helsinki | A | 3-2 | Koulierakis, Despedov, B.Thomas | H | 4-2 | Ozdoyev, Konstantelias, Toivio (o.g.), Murg | |||||
| GS | Eintracht Frankfurt Fußball | H | 2-1 | Živković, Koulierakis | A | 2-1 | Kędziora, Živković | |||||
| GS | Aberdeen FC | A | 3-2 | Despedov, Vieirinha, Schwab | H | 2-2 | Taison, Samatta | |||||
| 08 | GNK Dinamo Zagreb | A | 0-2 | H | 5-1 | Baba, Sušić (o.g.), B.Thomas, Koulierakis, Živković | ||||||
| 04 | Club Brugge KV | A | 0-1 | H | 0-2 | |||||||
| 24-25 | E1 | Q2 | FK BORAC BANJA LUKA | H | 3-2 | A | 1-0 | |||||
| Q3 | MALMÖ FF | A | 2-2 | H | 3-4 | * | ||||||
| E3 | Q4 | SHAMROCK ROVERS FC DUBLIN | H | 4-0 | A | 2-0 | ||||||
| GS | GALATASARAY SK İSTANBUL | A | 1-3 | |||||||||
| GS | FC FCSB BUCUREȘTI | H | 0-1 | |||||||||
| GS | FC VIKTORIA PLZEŇ | H | 2-2 | |||||||||
| GS | MANCHESTER UNITED FC | A | 0-2 | |||||||||
| GS | FK RĪGAS FS | A | 2-0 | |||||||||
| GS | FERENCVÁROSI TC BUDAPEST | H | 5-0 | |||||||||
| GS | SK SLAVIA PRAHA | H | 2-0 | |||||||||
| GS | REAL SOCIEDAD DE FÚTBOL SAN SEBASTIÁN | A | 0-2 | |||||||||
| 16 | FC FCSB BUCUREȘTI | H | 1-2 | A | 0-2 | |||||||
| 25-26 | E3 | Q3 | Wolfsberger AC | H | 0-0 | A | 1-0 | * | ||||
| Q4 | HNK Rijeka | A | 0-1 | H | 5-0 | |||||||
| GS | MK Maccabi Tel Aviv | H | 0-0 | |||||||||
| GS | Real Clube Celta de Vigo | A | 1-3 | |||||||||
| GS | Lille OSC | A | 4-3 | |||||||||
| GS | BSC Young Boys Bern | H | 4-0 | |||||||||
| GS | SK Brann Bergen | H | 1-1 | |||||||||
| GS | PFK Ludogorets 1945 Razgrad | A | 3-3 | |||||||||
| GS | Real Betis Balompié Sevilla | H | ||||||||||
| GS | Olympique Lyonnais | A | ||||||||||